Jan Baptist van Helmont (1580-1644), Ortus Medicinae (“Origins of Medicine”) 1648. “METABOLISM”.

INTRODUCTION. Jan Baptist van Helmont was the founder of the science of biochemistry’. Antoine Lavoisier was the founder of the science of chemistry. Equal to the Lavoisier first periodic listing of chemical elements’ is”enzyme classes”. Seven (7) classes of enzymes constitute periodicity. Organic chemistry’ concerns micromolecules that contain the element (C) carbon. The seven (7) classes … Continue reading Jan Baptist van Helmont (1580-1644), Ortus Medicinae (“Origins of Medicine”) 1648. “METABOLISM”.

“WATER: Hydrophobic Effect & Membrane Organization”.

 

Here I present: “WATER: Hydrophobic Effect & Membrane Organization”. 

PRELUDE
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In the Singer–Nicolson membrane, fluidity and self-assembly emerge because Tanford’s hydrophobic effect reflects water’s flickering tetrahedral clusters reorganizing to minimize frustrated hydrogen bonding.

INTRODUCTION.

Placed in the Singer–Nicolson fluid-mosaic model and Tanford’s hydrophobic effect, the flickering-cluster view of water becomes the thermodynamic driver of membrane organization rather than a background solvent.
1. Water structure → hydrophobic effect. (Charles Tanford)
Charles Tanford emphasized that the hydrophobic effect is water-driven, not oil-driven.
In bulk water, the flickering tetrahedral H-bond network continually reorganizes.
Nonpolar surfaces cannot participate in hydrogen bonding.
Water adjacent to hydrophobes is forced into more ordered, ice-like local structures to preserve hydrogen bonding.
This produces:
Lower entropy of interfacial water
A free-energy penalty proportional to exposed hydrophobic surface area
Key consequence:
Hydrophobic molecules aggregate to minimize the area of constrained, ordered water.
Thus, Charles Tanford’s hydrophobic effect is a direct macroscopic expression of flickering hydrogen-bond clusters being frustrated by apolar interfaces.
2. From hydrophobic collapse to bilayers.
When amphiphiles (lipids) are present:
Hydrophobic tails exclude water → cluster frustration minimized
Polar headgroups remain hydrated → tetrahedral bonding preserved
The system self-assembles into bilayers, micelles, or vesicles
Crucially:
No covalent forces are required
Assembly is entropic, mediated by water’s fluctuating structure
Water is not passive—it is the ordering agent.
3. Singer–Nicolson fluid mosaic revisited.
In the Singer–Nicolson model:
The membrane is a two-dimensional fluid
Lipids and proteins diffuse laterally
Proteins are embedded, not rigidly fixed
Reinterpreted via flickering clusters:
(a) Membrane fluidity
Hydrogen-bond rearrangements in hydration shells occur on picosecond timescales
This enables rapid lipid and protein mobility
The membrane’s “fluidity” reflects fast water reorganization, not just lipid disorder
(b) Protein insertion and stability
Transmembrane helices are stabilized because:
Hydrophobic residues reduce ordered-water penalties
Polar residues are positioned where hydration can persist
Protein folding in membranes is thus a water-structure optimization problem
4. Hydration layers as quasi-2D water.
At membrane surfaces:
Water forms structured hydration layers
These layers retain partial tetrahedral order, but are anisotropic
They couple membrane mechanics to bulk solvent fluctuations
This explains:
Membrane elasticity
Pressure and temperature sensitivity
Coupling between lipid phase transitions and solvent properties
5. Conceptual Synthesis (Arthur Koestler-style bisociation)
Level
Description
Molecular
Flickering tetrahedral H₂O clusters
Thermodynamic
Tanford hydrophobic effect (entropy of water)
Mesoscopic
Lipid self-assembly
Cellular
Singer–Nicolson fluid mosaic membrane
This is not association, but bisociation:
A membrane is simultaneously a lipid structure and a stabilized perturbation of water’s hydrogen-bond network.
6. One-Sentence Summary.
In the Singer–Nicolson membrane, fluidity and self-assembly emerge because Tanford’s hydrophobic effect reflects water’s flickering tetrahedral clusters reorganizing to minimize frustrated hydrogen bonding—making the membr­ane a dynamic interface between two regimes of structured water.

Continue reading ““WATER: Hydrophobic Effect & Membrane Organization”.”

“GREATEST SCIENTIST: #18 Linus Pauling Peptide Models”.

Here I present: “GREATIST SCIENTIST: #18 Linus Pauling Peptide Models“. PRELUDE. The image ATOP illustrates the backbone structure of a polypeptide chain and defines it. Phi (ϕ), Psi (ψ), and Omega (ω) are the three main dihedral (torsion) angles describing a protein’s backbone conformation, with ϕ (phi) around the N-Cα bond, ψ (psi) around the Cα-C bond, and ω (omega) … Continue reading “GREATEST SCIENTIST: #18 Linus Pauling Peptide Models”.

Frederic L. Holmes, “Hans Krebs: The Formation of a Scientific Life”, 1991. CONTINUED.

  Here I present: Frederic L. Holmes, “Hans Krebs: Formation of a Scientific Life, 1991. ­CONTINUED. Let’s go through the Hans Krebs “citrate cycle”, step by step. I’ll give both the cycle overview and the key molecules/energy outputs. 1. Purpose of the TCA Cycle Central metabolic pathway in aerobic respiration. Oxidizes acetyl-CoA to CO₂. Produces reducing … Continue reading Frederic L. Holmes, “Hans Krebs: The Formation of a Scientific Life”, 1991. CONTINUED.

Jan Baptist van Helmont (1580-1644),  Ortus Medicinae (“Origins of Medicine”) 1648.

Here I present: Jan Baptist van Helmont (1580-1644), Ortus Medicinae (“Origins of Medicine”) 1648. INTRODUCTION. Jan Baptist van Helmont (1580-1644) made significant contributions to the fields of chemistry and biology, including coining the word “gas“ and identifying carbon dioxide. He is considered the “father of biochemistry” for his chemical analysis of physiological processes, such as using … Continue reading Jan Baptist van Helmont (1580-1644),  Ortus Medicinae (“Origins of Medicine”) 1648.