Here I present: Arcady Mushegian, “Foundations of Comparative Genomics“, 2007. CONTINUED.
INTRODUCTION.
A 256-Protein Minimal Cell list (gene named) from Arcady Mushegian is BELOW.
256-Protein Minimal Cell.
0. Agreement.
I. Translation (94)
Ribosomal Proteins – Small Subunit (21)
1. RpsA (S1)
2. RpsB (S2)
3. RpsC (S3)
4. RpsD (S4)
5. RpsE (S5)
6. RpsF (S6)
7. RpsG (S7)
8. RpsH (S8)
9. RpsI (S9)
10. RpsJ (S10)
11. RpsK (S11)
12. RpsL (S12)
13. RpsM (S13)
14. RpsN (S14)
15. RpsO (S15)
16. RpsP (S16)
17. RpsQ (S17)
18. RpsR (S18)
19. RpsS (S19)
20. RpsT (S20)
21. RpsU (S21)
Ribosomal Proteins – Large Subunit (33)
22. RplA (L1)
23. RplB (L2)
24. RplC (L3)
25. RplD (L4)
26. RplE (L5)
27. RplF (L6)
28. RplI (L9)
29. RplJ (L10)
30. RplK (L11)
31. RplL (L12)
32. RplM (L13)
33. RplN (L14)
34. RplO (L15)
35. RplP (L16)
36. RplQ (L17)
37. RplR (L18)
38. RplS (L19)
39. RplT (L20)
40. RplU (L21)
41. RplV (L22)
42. RplW (L23)
43. RplX (L24)
44. RplY (L25)
45. RpmA (L27)
46. RpmB (L28)
47. RpmC (L29)
48. RpmD (L30)
49. RpmE (L31)
50. RpmF (L32)
51. RpmG (L33)
52. RpmH (L34)
Translation Factors & tRNA Machinery (40)
53. InfA (IF-1)
54. InfB (IF-2)
55. InfC (IF-3)
56. FusA (EF-G)
57. Tuf (EF-Tu)
58. Tsf (EF-Ts)
59. PrfA (RF-1)
60. PrfB (RF-2)
61. PrfC (RF-3)
62. Rrf (RRF)
Aminoacyl-tRNA synthetases (30)
63. AlaRS
64. ArgRS
65. AsnRS
66. AspRS
67. CysRS
68. GlnRS
69. GluRS
70. GlyRS
71. HisRS
72. IleRS
73. LeuRS
74. LysRS
75. MetRS
76. PheRS
77. ProRS
78. SerRS
79. ThrRS
80. TrpRS
81. TyrRS
82. ValRS
tRNA processing & modification (12)
83. TrmD
84. TrmB
85. TruA
86. TruB
87. MiaA
88. TilS
89. RlmA
90. RlmB
91. RlmC
92. RlmD
93. RlmE
94. RlmH
II. Energy Metabolism (34)
95. AtpA
96. AtpB
97. AtpE
98. AtpF
99. AtpH
100. AtpI
101. GapA
102. Pgk
103. TpiA
104. Eno
105. Pyk
106. Ldh
107. PdhA
108. PdhB
109. PdhC
110. PdhD
111. Fba
112. GpmA
113. AckA
114. Pta
115. Ndh
116. TrxA
117. TrxB
118. FolD
119. GuaB
120. DeoB
121. DeoC
122. DeoD
123. PyrG
124. PyrH
125. Adk
126. Ndk
127. RpiA
128. Zwf
III. Nucleotide Metabolism (23)
129. PurA
130. PurB
131. PurC
132. PurD
133. PurA
134. PurF
135. PurH
136. PurL
137. PurM
138. PurN
139. PurQ
140. PurS
141. PyrB
142. PyrC
143. PyrD
144. PyrE
145. PyrF
146. Upp
147. Udk
148. Tmk
149. ThyA
150. Dut
151. RibA
IV. DNA Replication (18)
152. DnaA
153. DnaB
154. DnaC
155. DnaG
156. DnaE
157. DnaN
158. HolA
159. HolB
160. HolC
161. HolD
162. PolA
163. GyrA
164. GyrB
165. TopA
166. Ssb
167. PriA
168. RecJ
V. Other Conserved Proteins (18)
169. Era
170. Obg
171. EngA
172. LepA
173. YchF
174. FtsZ
175. FtsA
176. DivIVA
177. SecA
178. SecY
179. SecE
180. SecG
181. YidC
182. LolA
183. LolC
184. LolD
185. BamA
186. BamD
VI. Chaperones (13)
187.DnaK
188. DnaJ
189. GrpE
190. GroEL
191. GroES
192. Tig
193. ClpB
194. ClpX
195. ClpP
196. HslU
197. HslV
198. Lon
199. IbpA
VII. Transcription (9)
200. RpoA
201. RpoB
202. RpoC
203. RpoD
204. NusA
205. NusB
206. NusG
207. GreA
208. GreB
VIII. Recombination & Repair (8)
209. RecA
210. RecF
211. RecO
212. RecR
213. MutS
214. MutL
215. UvrA
216. UvrB
IX. Coenzyme Metabolism (8)
217. NadA
218. NadB
219. NadC
220. NadD
221. NadE
222. CoaA
223. CoaD
224. CoaE
X. Exopolysaccharides / Envelope (8)
225. MurA
226. MurB
227. MurC
228. Mur
229. MurE
230. MurF
231. MraY
232. MurG
XI. Amino Acid Metabolism (7)
233. GlyA
234. IlvA
235. IlvB
236. IlvC
237. IlvD
238. ThrA
239. AspC
XII. Lipid Metabolism (6)
240.FabA
241. FabB
242. FabD
243. FabF
244. FabG
245. FabI
XIII. Inorganic Ion Uptake (5)
246. CorA
247. TrkA
248. TrkH
249. PhoU
250. PstB
XIV. Secretion / Receptors (5)
251. Ffh
252. FtsY
253. SecB
254. TatA
255. TatC
